feat: add citation support in research report block and markdown

* feat: add citation support in research report block and markdown

- Enhanced ResearchReportBlock to fetch citations based on researchId and pass them to the Markdown component.
- Introduced CitationLink component to display citation metadata on hover for links in markdown.
- Implemented CitationCard and CitationList components for displaying citation details and lists.
- Updated Markdown component to handle citation links and inline citations.
- Created HoverCard component for displaying citation information in a tooltip-like manner.
- Modified store to manage citations, including setting and retrieving citations for ongoing research.
- Added CitationsEvent type to handle citations in chat events and updated Message type to include citations.

* fix(log): Enable the logging level  when enabling the DEBUG environment variable (#793)

* fix(frontend): render all tool calls in the frontend #796 (#797)

* build(deps): bump jspdf from 3.0.4 to 4.0.0 in /web (#798)

Bumps [jspdf](https://github.com/parallax/jsPDF) from 3.0.4 to 4.0.0.
- [Release notes](https://github.com/parallax/jsPDF/releases)
- [Changelog](https://github.com/parallax/jsPDF/blob/master/RELEASE.md)
- [Commits](https://github.com/parallax/jsPDF/compare/v3.0.4...v4.0.0)

---
updated-dependencies:
- dependency-name: jspdf
  dependency-version: 4.0.0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* fix(frontend):added the display of the 'analyst' message #800 (#801)

* fix: migrate from deprecated create_react_agent to langchain.agents.create_agent (#802)

* fix: migrate from deprecated create_react_agent to langchain.agents.create_agent

Fixes #799

- Replace deprecated langgraph.prebuilt.create_react_agent with
  langchain.agents.create_agent (LangGraph 1.0 migration)
- Add DynamicPromptMiddleware to handle dynamic prompt templates
  (replaces the 'prompt' callable parameter)
- Add PreModelHookMiddleware to handle pre-model hooks
  (replaces the 'pre_model_hook' parameter)
- Update AgentState import from langchain.agents in template.py
- Update tests to use the new API

* fix:update the code with review comments

* fix: Add runtime parameter to compress_messages method(#803) 

* fix: Add runtime parameter to compress_messages method(#803)

    The compress_messages method was being called by PreModelHookMiddleware
    with both state and runtime parameters, but only accepted state parameter.
    This caused a TypeError when the middleware executed the pre_model_hook.

    Added optional runtime parameter to compress_messages signature to match
    the expected interface while maintaining backward compatibility.

* Update the code with the review comments

* fix: Refactor citation handling and add comprehensive tests for citation features

* refactor: Clean up imports and formatting across citation modules

* fix: Add monkeypatch to clear AGENT_RECURSION_LIMIT in recursion limit tests

* feat: Enhance citation link handling in Markdown component

* fix: Exclude citations from finish reason handling in mergeMessage function

* fix(nodes): update message handling

* fix(citations): improve citation extraction and handling in event processing

* feat(citations): enhance citation extraction and handling with improved merging and normalization

* fix(reporter): update citation formatting instructions for clarity and consistency

* fix(reporter): prioritize using Markdown tables for data presentation and comparison

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: LoftyComet <1277173875@qq。>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

src/prompts/reporter.md

@@ -372,9 +372,12 @@ Structure your report in the following format:
 
 - If uncertain about any information, acknowledge the uncertainty.
 - Only include verifiable facts from the provided source material.
-- Place all citations in the "Key Citations" section at the end, not inline in the text.
-- For each citation, use the format: `- [Source Title](URL)`
-- Include an empty line between each citation for better readability.
+- Structure your report to include: Key Points, Overview, Detailed Analysis, Survey Note (optional), and References.
+- Use inline citations [n] in the text where appropriate.
+- The number n must correspond to the source index in the provided 'Available Source References' list.
+- Make the inline citation a link to the reference at the bottom using the format `[[n]](#ref-n)`.
+- In the References section at the end, list the sources using the format `[[n]](#citation-target-n) **[Title](URL)**`.
+- PRIORITIZE USING MARKDOWN TABLES for data presentation and comparison. Use tables whenever presenting comparative data, statistics, features, or options.
 - Include images using `![Image Description](image_url)`. The images should be in the middle of the report, not at the end or separate section.
 - The included images should **only** be from the information gathered **from the previous steps**. **Never** include images that are not from the previous steps
 - Directly output the Markdown raw content without "```markdown" or "```".

src/prompts/reporter.zh_CN.md

@@ -370,9 +370,12 @@ CURRENT_TIME: {{ CURRENT_TIME }}
 
 - 如果对任何信息不确定，确认不确定性。
 - 仅包括来自提供的源资料的可验证事实。
-- 将所有引用放在末尾的"关键引文"部分，而不是文本中的内联。
-- 对于每个引用，使用格式：`- [来源标题](URL)`
-- 在每个引文之间包括一个空行以获得更好的可读性。
+- 报告结构应包含：核心要点、概述、详细分析、调查说明（可选）和参考文献。
+- 在正文适当位置使用内联引用 [n]。
+- 数字 n 必须对应提供的"可用来源参考"列表中的索引。
+- 将内联引用设为指向底部参考文献的链接，格式为 `[[n]](#ref-n)`。
+- 在末尾的参考文献部分，使用格式 `[[n]](#citation-target-n) **[标题](URL)**` 列出来源。
+- 优先使用 Markdown 表格进行数据展示和比较。在展示对比数据、统计数据、特性或选项时，请务必使用表格。
 - 使用`![图像说明](图像URL)`包括图像。图像应该在报告的中间，而不是末尾或单独的部分。
 - 包含的图像应**仅**来自**从之前步骤中**收集的信息。**绝不**包括不来自之前步骤的图像
 - 直接输出Markdown原始内容，不带"```markdown"或"```"。