Commit Graph

22 Commits

Author SHA1 Message Date
DanielWalnut c1b7f1d189 feat: static system prompt with DynamicContextMiddleware for prefix-cache optimization (#2801)
* feat(middleware): inject dynamic context via DynamicContextMiddleware

Move memory and current date out of the system prompt and into a
dedicated <system-reminder> HumanMessage injected once per session
(frozen-snapshot pattern) via a new DynamicContextMiddleware.

This keeps the system prompt byte-exact across all users and sessions,
enabling maximum Anthropic/Bedrock prefix-cache reuse.

Key design decisions:
- ID-swap technique: reminder takes the first HumanMessage's ID
  (replacing it in-place via add_messages), original content gets a
  derived `{id}__user` ID (appended after). Preserves correct ordering.
- hide_from_ui: True on reminder messages so frontend filters them out.
- Midnight crossing: date-update reminder injected before the current
  turn's HumanMessage when the conversation spans midnight.
- INFO-level logging for production diagnostics.

Also adds prompt-caching breakpoint budget enforcement tests and
updates ClaudeChatModel docs to reference the new pattern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(token-usage): log input/output token detail breakdown in middleware

Extend the LLM token usage log line to include input_token_details and
output_token_details (cache_creation, cache_read, reasoning, audio, etc.)
when present. Adds tests covering Anthropic cache detail logging from
both usage_metadata and response_metadata.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: fix nginx

* fix(middleware): always inject date; gate memory on injection_enabled

Date injection is now unconditional — it is part of the static system
prompt replacement and should always be present. Memory injection
remains gated by `memory.injection_enabled` in the app config.

Previously the entire DynamicContextMiddleware was skipped when
injection_enabled was False, which also suppressed the date.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(lint): format files and correct test assertions for token usage middleware

- ruff format dynamic_context_middleware.py and test_claude_provider_prompt_caching.py
- Remove unused pytest import from test_dynamic_context_middleware.py
- Fix two tests that asserted response_metadata fallback logic that
  doesn't exist: replace with tests that match actual middleware behavior

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(middleware): address Copilot review comments on DynamicContextMiddleware

- Use additional_kwargs flag for reminder detection instead of content
  substring matching, so user messages containing '<system-reminder>'
  are not mistakenly treated as injected reminders
- Generate stable UUID when original HumanMessage.id is None to prevent
  ambiguous 'None__user' derived IDs and message collisions
- Downgrade per-turn no-op log to DEBUG; keep actual injection events at INFO
- Add two new tests: missing-id UUID fallback and user-text false-positive

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-09 09:27:02 +08:00
Tao Liu daa3ffc29b feat(loop-detection): make loop detection configurable with per-tool frequency overrides (#2711)
* Make loop detection configurable

Expose LoopDetectionMiddleware thresholds through config.yaml while preserving existing defaults and allowing the middleware to be disabled.

Refs bytedance/deer-flow#2517

* feat(loop-detection): add per-tool tool_freq_overrides to Phase 1

Adds ToolFreqOverride model and tool_freq_overrides field to
LoopDetectionConfig, wires it through LoopDetectionMiddleware, and
documents the option in config.example.yaml.

Resolves the gap flagged in the #2586 review: without per-tool overrides,
users hit by #2510/#2511 (RNA-seq workflows exceeding the bash hard limit)
had no way to raise thresholds for one tool without loosening the global
limit for every tool.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* docs(loop-detection): document tool_freq_overrides in LoopDetectionMiddleware docstring

Add the missing Args entry for tool_freq_overrides, explaining the
(warn, hard_limit) tuple structure and how per-tool thresholds supersede
the global tool_freq_warn / tool_freq_hard_limit for named tools.
Also run ruff format on the three files flagged by the lint check.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(loop-detection): validate LoopDetectionMiddleware __init__ params eagerly

Raise clear ValueError at construction time instead of crashing at
unpack-time inside _track_and_check when bad values are passed:
- tool_freq_overrides: must be 2-tuples of positive ints with hard_limit >= warn
- scalar thresholds: warn_threshold, hard_limit, tool_freq_warn,
  tool_freq_hard_limit must be >= 1 and hard limits must >= their warn pairs
- window_size, max_tracked_threads must be >= 1

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(test): isolate credential loader directory-path test from real ~/.claude

The test didn't monkeypatch HOME, so on any machine with real Claude Code
credentials at ~/.claude/.credentials.json the function fell through to
those credentials and the assertion failed. Adding HOME redirect ensures
the default credential path doesn't exist during the test.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* style(test): add blank lines after import pytest in TestInitValidation

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(loop-detection): collapse dual validation to LoopDetectionConfig

Modifications
  - LoopDetectionMiddleware.__init__: stripped of all ValueError raises;
    becomes a plain field-assignment constructor.
  - LoopDetectionMiddleware.from_config: classmethod that builds the
    middleware from a Pydantic-validated LoopDetectionConfig and handles
    the ToolFreqOverride -> tuple[int, int] conversion.
  - agents/factory.py: SDK construction routed through
    LoopDetectionMiddleware.from_config(LoopDetectionConfig()) so the
    defaults path is Pydantic-validated too.
  - agents/lead_agent/agent.py: uses from_config instead of unpacking
    config fields by hand.
  - tests/test_loop_detection_middleware.py: deleted TestInitValidation
    (16 methods exercising the removed __init__ checks); added
    TestFromConfig (4 tests: scalar field mapping, override tuple
    conversion, empty overrides, behavioral smoke test).

Result: one validation layer (Pydantic), zero duplication, no __new__
hacks. Both production construction sites flow through LoopDetectionConfig.

Test results
  make test   -> 2977 passed, 18 skipped, 0 failed (137s)
  make format -> All checks passed; 411 files left unchanged

* feat(agents): make loop_detection configurable in create_deerflow_agent

Adds a `loop_detection: bool | AgentMiddleware = True` field to
RuntimeFeatures, mirroring the existing pattern used by `sandbox`,
`memory`, and `vision`. SDK users can now disable LoopDetectionMiddleware
or replace it with a custom instance built from their own
LoopDetectionConfig — e.g.
`LoopDetectionMiddleware.from_config(my_cfg)` — instead of being stuck
with the hardcoded defaults previously installed by the SDK factory.

The lead-agent path (which already reads AppConfig.loop_detection) is
unchanged, and the default `True` preserves prior always-on behavior for
all existing callers.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: knight0940 <631532668@qq.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: Amorend <142649913+knight0940@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-05-07 16:15:15 +08:00
AochenShen99 cef4224381 fix(skills): enforce allowed-tools metadata (#2626)
* fix(skills): parse allowed-tools frontmatter

* fix(skills): validate allowed-tools metadata

* fix(skills): add shared allowed-tools policy

* fix(subagents): enforce skill allowed-tools

* fix(agent): enforce skill allowed-tools

* refactor(skills): dedupe TypeVar and reuse cached enabled skills

- Drop redundant module-level TypeVar in tool_policy; rely on PEP 695 syntax.
- Expose get_cached_enabled_skills() and have the lead agent reuse it
  instead of synchronously rescanning skills on every request.

* fix(agent): expose config-scoped skill cache

* fix(subagents): pass filtered tools explicitly

* fix(skills): clean allowed-tools policy feedback
2026-05-07 08:34:43 +08:00
yangzheli 59c4a3f0a4 feat(agent): add custom-agent self-updates with user isolation (#2713)
* feat(agent): add update_agent tool for in-chat custom-agent self-updates (#2616)

Custom agents had no built-in way to persist updates to their own SOUL.md /
config.yaml from a normal chat — `setup_agent` was only bound during the
bootstrap flow, so when the user asked the agent to refine its description
or personality, the agent would shell out via bash/write_file and the edits
landed in a temporary sandbox/tool workspace instead of
`{base_dir}/agents/{agent_name}/`.

Changes:
- New `update_agent` builtin tool with partial-update semantics (only the
  fields you pass are written) and atomic temp-file + os.replace writes so
  a failed update never corrupts existing SOUL.md / config.yaml.
- Lead agent now binds `update_agent` in the non-bootstrap path whenever
  `agent_name` is set in the runtime context. Default agent (no
  agent_name) and bootstrap flow are unchanged.
- New `<self_update>` system-prompt section is injected for custom agents,
  instructing them to use `update_agent` — and explicitly NOT bash /
  write_file — to persist self-updates.
- Tests: 11 new cases in `tests/test_update_agent_tool.py` covering
  validation (missing/invalid agent_name, unknown agent, no fields),
  partial updates (soul-only, description-only, skills=[] vs omitted),
  no-op detection, atomic-write safety, and AgentConfig round-tripping;
  plus 2 new cases in `tests/test_lead_agent_prompt.py` covering the
  self-update prompt section.
- Docs: updated backend/CLAUDE.md builtin tools list and tools.mdx
  (en/zh) with the new tool description.

* feat(agent): isolate custom agents per user

Store custom agent definitions under the effective user, keep legacy agents readable until migration, and cover API/tool/migration behavior with tests.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat: consistent write/delete targets & add --user-id to migration

---------

Co-authored-by: Cursor <cursoragent@cursor.com>
2026-05-05 23:17:42 +08:00
greatmengqi 8ba01dfd83 refactor: thread app_config through lead and subagent task path (#2666)
* refactor: thread app config through lead prompt

* fix: honor explicit app config across runtime paths

* style: format subagent executor tests

* fix: thread resolved app config and guard subagents-only fallback

Address two PR review findings:

1. _create_summarization_middleware passed the original (possibly None)
   app_config into create_chat_model, forcing the model factory back to
   ambient get_app_config() and risking config drift between the
   middleware's resolved view and the model's view. Pass the resolved
   AppConfig instance through end-to-end.

2. get_available_subagent_names accepted Any-typed config and forwarded
   it to is_host_bash_allowed, which reads ``.sandbox``. A
   SubagentsAppConfig (also accepted upstream as a sum-type input) has
   no ``.sandbox`` attribute and would be silently treated as "no
   sandbox configured", incorrectly disabling the bash subagent. Guard
   on hasattr and fall back to ambient lookup otherwise.

Adds regression tests for both paths.

* chore: simplify hasattr guard and tighten regression tests

- Collapse if/else into ternary in get_available_subagent_names; hasattr(None, ...) is False so the explicit None check was redundant.
- Drop comments that narrate the change rather than explain non-obvious WHY (test names already convey intent).
- Replace stringly-typed sentinel "no-arg" in regression test with direct args tuple comparison.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-05-02 06:37:49 +08:00
greatmengqi 8b61c94e1d fix: keep lead agent graph factory signature compatible (#2678)
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-05-01 15:43:28 +08:00
greatmengqi 38714b6ceb refactor: thread app_config through middleware factories (#2652)
* refactor: thread app_config through middleware factories

Continues the incremental config-refactor sequence (#2611 root, #2612 lead
path) one layer deeper into the middleware factories. Two ambient lookups
inside _build_runtime_middlewares are eliminated and the LLMErrorHandling
band-aid removed:

- _build_runtime_middlewares / build_lead_runtime_middlewares /
  build_subagent_runtime_middlewares now require app_config: AppConfig.
- get_guardrails_config() inside the factory is replaced with
  app_config.guardrails (semantically identical — same default-factory
  GuardrailsConfig — verified by direct equality check).
- LLMErrorHandlingMiddleware.__init__ now requires app_config and reads
  circuit_breaker fields directly. The class-level
  circuit_failure_threshold / circuit_recovery_timeout_sec defaults are
  removed along with the try/except (FileNotFoundError, RuntimeError):
  pass band-aid — the let-it-crash invariant the rest of the refactor
  enforces.

Caller chain (already-resolved app_config sources):
- _build_middlewares in lead_agent/agent.py: reorder so
  resolved_app_config = app_config or get_app_config() is computed BEFORE
  build_lead_runtime_middlewares is called, then passed as kwarg.
- SubagentExecutor: optional app_config parameter (mirrors the lead-agent
  pattern); _create_agent does the same `or get_app_config()` fallback at
  agent-build time, so task_tool callers don't need to plumb app_config
  through yet (typed-context plumbing for tool runtimes is a separate
  refactor).

Tests:
- test_llm_error_handling_middleware: _make_app_config helper using
  AppConfig(sandbox=SandboxConfig(use="test")) — same minimal-config
  pattern conftest already uses. Three direct LLMErrorHandlingMiddleware()
  calls each followed by post-construction circuit_breaker mutation fold
  cleanly into _build_middleware(circuit_failure_threshold=...,
  circuit_recovery_timeout_sec=...).

Verification:
- tests/test_llm_error_handling_middleware.py — 14 passed
- tests/test_subagent_executor.py — 28 passed
- tests/test_tool_error_handling_middleware.py — 6 passed
- tests/test_task_tool_core_logic.py — 18 passed (verifies task_tool
  unchanged behavior)
- Full suite: 2697 passed, 3 skipped. The single intermittent failure in
  tests/test_client_e2e.py::test_tool_call_produces_events is pre-existing
  LLM flakiness (the test asserts the model decided to call a tool;
  reproduces 1/3 on unchanged main as well).

* fix: address middleware app config review comments

* fix: satisfy app config annotation lint

* test: cover explicit app config middleware wiring

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-30 12:41:09 +08:00
greatmengqi e82940c03d refactor: thread release config through lead path (#2612)
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-28 14:53:18 +08:00
rayhpeng d8ecaf46c9 feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)
* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>
2026-04-26 11:05:47 +08:00
DanielWalnut b970993425 fix: read lead agent options from context (#2515)
* fix: read lead agent options from context

* fix: validate runtime context config
2026-04-24 22:46:51 +08:00
DanielWalnut d78ed5c8f2 fix: inherit subagent skill allowlists (#2514) 2026-04-24 21:24:42 +08:00
Nan Gao f9ff3a698d fix(middleware): avoid rescuing non-skill tool outputs during summarization (#2458)
* fix(middelware): narrow skill rescue to skill-related tool outputs

* fix(summarization): address skill rescue review feedback

* fix: wire summarization skill rescue config

* fix: remove dead skill tool helper

* fix(lint): fix format

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-04-24 21:19:46 +08:00
Shawn Jasper 55474011c9 fix(subagent): inherit parent agent's tool_groups in task_tool (#2305)
* fix(subagent): inherit parent agent's tool_groups in task_tool

When a custom agent defines tool_groups (e.g. [file:read, file:write, bash]),
the restriction is correctly applied to the lead agent. However, when the lead
agent delegates work to a subagent via the task tool, get_available_tools() is
called without the groups parameter, causing the subagent to receive ALL tools
(including web_search, web_fetch, image_search, etc.) regardless of the parent
agent's configuration.

This fix propagates tool_groups through run metadata so that task_tool passes
the same group filter when building the subagent's tool set.

Changes:
- agent.py: include tool_groups in run metadata
- task_tool.py: read tool_groups from metadata and pass to get_available_tools()

* fix: initialize metadata before conditional block and update tests for tool_groups propagation

- Initialize metadata = {} before the 'if runtime is not None' block to
  avoid Ruff F821 (possibly-undefined variable) and simplify the
  parent_tool_groups expression.
- Update existing test assertion to expect groups=None in
  get_available_tools call signature.
- Add 3 new test cases:
  - test_task_tool_propagates_tool_groups_to_subagent
  - test_task_tool_no_tool_groups_passes_none
  - test_task_tool_runtime_none_passes_groups_none
2026-04-18 22:17:37 +08:00
Hinotobi 2176b2bbfc fix: validate bootstrap agent names before filesystem writes (#2274)
* fix: validate bootstrap agent names before filesystem writes

* fix: tighten bootstrap agent-name validation
2026-04-16 08:36:42 +08:00
DanielWalnut 4ba3167f48 feat: flush memory before summarization (#2176)
* feat: flush memory before summarization

* fix: keep agent-scoped memory on summarization flush

* fix: harden summarization hook plumbing

* fix: address summarization review feedback

* style: format memory middleware
2026-04-14 15:01:06 +08:00
DanielWalnut eef0a6e2da feat(dx): Setup Wizard + doctor command — closes #2030 (#2034) 2026-04-10 17:43:39 +08:00
knukn f8fb8d6fb1 feat/per agent skill filter (#1650)
* feat(agent): 为AgentConfig添加skills字段并更新lead_agent系统提示

在AgentConfig中添加skills字段以支持配置agent可用技能
更新lead_agent的系统提示模板以包含可用技能信息

* fix: resolve agent skill configuration edge cases and add tests

* Update backend/packages/harness/deerflow/agents/lead_agent/prompt.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* refactor(agent): address PR review comments for skills configuration

- Add detailed docstring to `skills` field in `AgentConfig` to clarify the semantics of `None` vs `[]`.
- Add unit tests in `test_custom_agent.py` to verify `load_agent_config()` correctly parses omitted skills and explicit empty lists.
- Fix `test_make_lead_agent_empty_skills_passed_correctly` to include `agent_name` in the runtime config, ensuring it exercises the real code path.

* docs: 添加关于按代理过滤技能的配置说明

在配置示例文件和文档中添加说明,解释如何通过代理的config.yaml文件限制加载的技能

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2026-04-02 15:02:09 +08:00
knukn 481494b9c0 feat(client): support custom middleware injection (#1520)
* feat(client): support custom middleware injection

Add support for custom middleware, allowing custom middleware list to be passed when initializing DeerFlowClient. These middleware will be injected after the default middleware when creating the agent, extending the agent's functionality.

* feat: inject custom middlewares before ClarificationMiddleware to preserve ordering

- Add `custom_middlewares` param to `_build_middlewares`
- Inject custom middlewares right before `ClarificationMiddleware` to keep it as the last in the chain
- Remove unsafe `.extend()` in `client.py`
- Update tests in `test_client.py` and `test_lead_agent_model_resolution.py` to assert correct injection ordering
2026-03-29 11:24:46 +08:00
Admire 080a03f3bc fix(config): fix summarization model alias resolution (#1378)
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-03-26 14:48:45 +08:00
greatmengqi 16ed797e0e feat: add configurable log level and token usage tracking (#1301)
* feat: add configurable log level and token usage tracking

- Add `log_level` config to control deerflow module log level, synced
  to LangGraph Server via serve.sh `--server-log-level`
- Add `token_usage.enabled` config with TokenUsageMiddleware that logs
  input/output/total tokens per LLM call from usage_metadata
- Add .omc/ to .gitignore

* fix: use info level for token usage logs since feature has its own toggle

* fix: sort imports to pass lint check

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-03-25 08:13:26 +08:00
lhd 0091d9f071 feat(tools): add tool_search for deferred MCP tool loading (#1176)
* feat(tools): add tool_search for deferred MCP tool loading

When multiple MCP servers are enabled, total tool count can exceed 30-50,
causing context bloat and degraded tool selection accuracy. This adds a
deferred tool loading mechanism controlled by `tool_search.enabled` config.

- Add ToolSearchConfig with single `enabled` field
- Add DeferredToolRegistry with regex search (select:, +keyword, keyword)
- Add tool_search tool returning OpenAI-compatible function JSON
- Add DeferredToolFilterMiddleware to hide deferred schemas from bind_tools
- Add <available-deferred-tools> section to system prompt
- Enable MCP tool_name_prefix to prevent cross-server name collisions
- Add 34 unit tests covering registry, tool, prompt, and middleware

* fix: reset stale deferred registry and bump config_version

- Reset deferred registry upfront in get_available_tools() to prevent
  stale tool entries when MCP servers are disabled between calls
- Bump config_version to 2 for new tool_search config field

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(tests): mock get_app_config in prompt section tests for CI

CI has no config.yaml, causing TestDeferredToolsPromptSection to fail
with FileNotFoundError. Add autouse fixture to mock get_app_config.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-17 20:43:55 +08:00
DanielWalnut 76803b826f refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)
* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-14 22:55:52 +08:00